Software

Many of the models we develop are available as external pagepackages to the Bayesian software package external pageBEAST2. Some of our models are also available within the Bayesian software package external pageRevBayes (not listed on this page). We also release R-packages on external pageCRAN or external pageGitHub. Finally, we also make some additional resources available on our external pagepublic GitHub repository. All of our packages are open-source and links to the source code are provided below.

Phylodynamic Models (tree/network generating models)

                Birth-death models

                Coalescent models

Substitution models

General tools

Simulation tools

Estimation of birth-death model parameters

Comparative phylogenetic methods

Dashboards

APIs

* Maintainer(s) not in cEvo any more.                            + Not maintained any more.

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