Protein Function Prediction via Graph Kernels

Main content

Karsten Borgwardt, Cheng S. Ong, Stefan Schönauer, S.V.N. Vishwanathan, Alexander Smola, Hans-Peter Kriegel

Protein Function Prediction via Graph Kernels

Summary

In this work from 2005, we employed random walk graph kernels to compare graph models of protein structures, to then classify the proteins into functional classes.

Further information

Information on additional protein graph kernels (Chapter 2 from Karsten Borgwardt's master thesis).

Reference

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Karsten Borgwardt, Cheng S. Ong, Stefan Schönauer, S.V.N. Vishwanathan, Alexander Smola, Hans-Peter Kriegel
Protein Function Prediction via Graph Kernels,
Accepted at Intelligent Systems in Molecular Biology (ISMB 2005) and Bioinformatics 2005 21(suppl_1):i47-i56. (Online)

@article{Borgwardt_Protein_2005,
author = {Borgwardt, Karsten M. and Ong, Cheng Soon and Sch\"{o}nauer, Stefan and Vishwanathan, S. V. N. and Smola, Alex J. and Kriegel, Hans-Peter},
title = {Protein function prediction via graph kernels},
volume = {21},
number = {suppl 1},
pages = {i47-i56},
year = {2005},
doi = "http://dx.doi.org/10.1093/bioinformatics/bti1007",
URL = {http://bioinformatics.oxfordjournals.org/content/21/suppl_1/i47.abstract},
journal = {Bioinformatics}
}

 
 
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