Confounder-corrected Classification with Support Vector Machines

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Correcting Support Vector Machines for confounding factors in biological data classification

Limin Li, Barbara Rakitsch, Karsten Borgwardt

ccSVM: Correcting Support Vector Machines for confounding factors in biological data classification

Code

The code written in Matlab can be downloaded from our GitHub repository here.

References

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Limin Li, Barbara Rakitsch and Karsten Borgwardt
ccSVM: Correcting Support Vector Machines for confounding factors in biological data classification,
Accepted at ISMB 2011 and Bioinformatics (2011) 27 (13): i342-i348. (Online)

Further information and the code can be found on the project page.

@article{Li-2011-ISMB_Bioinformatics,
author = {Li, Limin and Rakitsch, Barbara and Borgwardt, Karsten},
title = {cc{SVM}: correcting {S}upport {V}ector {M}achines for confounding factors in biological data classification},
volume = {27},
number = {13},
pages = {i342-i348},
year = {2011},
doi = "10.1093/bioinformatics/btr204",
URL = {http://bioinformatics.oxfordjournals.org/content/27/13/i342.abstract},
eprint = {http://bioinformatics.oxfordjournals.org/content/27/13/i342.full.pdf+html},
journal = {Bioinformatics}
}

 
 
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