SConES
Summary
SConES is a network-guided multi-locus association mapping methods. It allows for the discovery genetic loci that are maximally associated with a phenotype, and tend to be connected on an underlying network. This network can be constructed from a gene-gene interaction network (based on proximity), or in any way such that you believe that neighboring SNPs should tend to be selected together. Download (ZIP, 350 KB)vertical_align_bottom
Code
Matlab code can be downloaded here: DownloadSConES code (ZIP, 350 KB)vertical_align_bottom
Publication
Efficient network-guided multi-locus association mapping with graph cuts
Chloé-Agathe Azencott, Dominik G. Grimm, Mahito Sugiyama, Yoshinobu Kawahara and Karsten Borgwardt
ISMB 2013 and Bioinformatics 2013, 29 (13): i171-i179
external pageOnlinecall_made | ETH Research Collection | Project page including code