LMM-Lasso

Enlarged view: Logo of Journal Bioinformatics

Barbara Rakitsch, Christoph Lippert, Oliver Stegle, Karsten Borgwardt

A Lasso Multi-Marker Mixed Model for Association Mapping with Population Structure Correction

Summary

We present a linear model with sparsity constraints (Lasso model) for association mapping and phenotype prediction, which corrects for population strucure.

Code

The code is written in Python and can be downloaded from our GitHub repository external pagehere.

Publication

A Lasso Multi-Marker Mixed Model for Association Mapping with Population Structure Correction

Barbara Rakitsch, Christoph Lippert, Oliver Stegle and Karsten Borgwardt
Bioinformatics 2013, 29(2): 206-214
external pageOnline  |  ETH Research Collection  |  Project page  |  external pageGitHub

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