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staRank
News
Oct 15
The workshop Statistical Genomics and Data Integration for Personalized Medicine will take place in Ascona between May 12, 2013 and May 17, 2013.
Mar 4
The Bertinoro Computational Biology meeting on Computational Cancer Genomics will take place Sep 8-13.
An R package for ranking variables based on their stability
Current version
0.99.3 Apr 2012
Description
Detecting all relevant variables from a data set is challenging, especially when only few samples are available and data is noisy. Stability ranking provides improved variable rankings of increased robustness using resampling or subsampling.
Installation
staRank is distributed under the GNU General Public License.
It will be available through Bioconductor (currently under review).
Requirements
The package does not depend on other R packages.
Manual source installation
- Download staRank_0.99.3.tar.gz.
- Type "R CMD INSTALL staRank_0.99.3.tar.gz" on the shell.
Additional Information
After installation you can load the package with
R> library(staRank)
To get help type
R> ?staRank
Two example analysis using stability ranking can be found in
R> vignette("staRank")
Authors and Contributors
Citations
When using staRank, please cite:
- Siebourg, J., Merdes, G., Misselwitz, B., Hardt, W.-D., and Beerenwinkel, N. (2012). Stability of gene rankings from RNAi screens. Bioinformatics, doi: 10.1093/bioinformatics/bts192
Contact
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