New in version 0.1.01 --------------------- + Optimized search strategy for simulated annealing: Suggesting relations with probability e^{-change in data explained without errors} + Support for calculating MAP estimates as well as GPS (-g option). New in version 0.1.00 --------------------- + ct-cbn.h: Functions are now shared in ct-cbn.h + h-cbn: Hidden-Markov Conjunctive Bayesian networks: Uses EM to estimate posets and parameters from noisy mutation patterns. Includes simulated annealing search algorithm to find ML poset. (-L option) + Increased performance after profiling (eg, ham_dist()). + Using openmp for p arallelization: Requires gcc > 4.2. New in version 0.0.03 --------------------- + Support to calculate genetic progression score (GPS). + Fixed bug while reducing to cover relations: New function reduce_to_cover_relations() uses BFS to search whole lattice, instead of comparing only pairs. + Fixed bug in function draw_samples(): gsl_ran_exp() has mu = 1/lambda as its argument instead of lambda.