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Armin Töpfer
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Current Research Projects
Probabilistic inference of viral quasispecies.
Research Interests
- Graphical modeling
- Algorithm design
- Code optimization
- Secondary RNA structure prediction
Publications
Papers
- Kalas M., Puntervoll P., Joseph A., Bartaseviciute E., Töpfer A., Venkataraman P., Pettifer S., Bryne J.C., Ison J., Blanchet C., Rapacki K., Jonassen I. (2010)
BioXSD: the common data-exchange format for everyday bioinformatics web services. Bioinformatics, 26, i540-i546
Curriculum Vitae
| 2009 - 2011 |
M.Sc. in Bioinformatics and Genome Research, Bielefeld University, Bielefeld, Germany Thesis: Prediction of Group I Introns under structure variation. |
| 2008 - 2011 |
Research assistant at the BiBiServ (Bielefeld University Bioinformatics Service), Faculty of Technology, Bielefeld University, Germany Programmer at the BiBiServ2 project. Migration existing architecture to JSF2 and adoption of PrimeFaces as the main component suite. Development of automatically generated web surfaces with JSF2. |
| 2009 - 2011 |
20% Programmer at Parallab (High performance computing laboratory), BCCS (Bergen Center for Computational Science), Uni Computing, Norway Development of java libraries offering parsing/resolving WSDL and XML Schema files. Project is funded by EMBRACE Network of Excellence coordinated by EBI. Further development of a BPEL editor to construct complex workflows using the NetBeans Platform. |
| 2009 |
Bioinformatics internship at CBU (Computational Biology Unit), BCCS, Uni Computing, Bergen, Norway Implementation of a fully functional web-based BPEL editor for linear workflows. Working as a team member on the eSysbio project, funded by the Research Council of Norway. Supported by ERASMUS studentship for foreign internships. |
| 2006 - 2009 |
B.Sc. in Bioinformatics and Genome Research, Bielefeld University, Bielefeld, Germany Thesis: Ideas for and implementation of an automated statistical data acquisition and visualization of BiBiServ2 services. |
| 2006 | High school degree (Abitur) in Mathematics and Biology at the Annette-von-Droste-Hulshoff -Gymnasium, Gelsenkirchen, Germany |
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